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Table 1 Results for trials using MBCdeg2 with PDEG = 0.25 and P1 = 0.5

From: Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data

 

DEG1

DEG2

non-DEG

Total

L2 Norm

(a) AUC = 0.9295

 First cluster

884

3

317

1204

0.9792

 Second cluster

3

900

222

1125

0.9779

 Third cluster

363

347

6961

7671

0.0029

(b) AUC = 0.6336

 First cluster

12

935

352

1299

0.9546

 Second cluster

1238

289

7143

8670

0.1904

 Third cluster

0

26

5

31

1.7785

Truth

1250

1250

7500

10,000

 
  1. Two trial results with (a) high and (b) low AUC values as shown in Fig. 1 are described. MBCdeg2 was performed using K = 3, both trials output three clusters. The third and second clusters for the trials (a) and (b) were considered to be non-DEG clusters, respectively. For details, see the main text