Fig. 3
From: ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process
Overalignment example block #2. The 3 MSAs represent columns 1001–1188, 933–1108, and 985–1169 for true, MAFFT, and ProPIP, respectively. Analgously to Fig. 2, MAFFT produces a too short alignment while ProPIP is closer to the true MSA on top. The similarity value (AlignStat v1.3.1 [19]) is for MAFFT \(81\%\) while ProPIP \(86\%\) [27]. Column by column similarity values are shown under true MSA for both aligners. See also Fig. 2