Fig. 5
From: ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process
Quality score. The 2500 MSAs obtained as described in the Results section have been scored with qscore [20]. The quality scoring (Cline et al. shift score [21]) is represented with black dots while as a reference (dashed line) we have also added the score obtained by MAFFT alignment (using ep equal to 0). ProPIP proves to be very robust to a sustained disturbance of indel rates also from the MSA quality point of view