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Table 1 Hyper-parameters of proposed deep architecture

From: An Ensemble Deep Learning based Predictor for Simultaneously Identifying Protein Ubiquitylation and SUMOylation Sites

Subnets

Layer category

Hyper-parameters

Activation function

Size

Filters

Dropout

Sequence

1D Convolution

Relu

2

201

0.4

Relu

3

151

0.4

Relu

5

101

0.4

Dense

Relu

256

–

0.3

Relu

128

–

0

Sigmoid

2

–

–

Physico-O

Dense

Relu

256

–

0.2

Relu

128

–

0.1

Sigmoid

2

–

–

Physico-P

Dense

Relu

512

–

0.3

Relu

256

–

0.2

Relu

128

–

0.1

Sigmoid

2

–

–

Physico-H

Dense

Relu

1024

–

0.4

Relu

512

–

0.3

Relu

256

–

0.2

Relu

128

–

0.1

Sigmoid

2

–

–

Physico-C

1D Convolution

Relu

2

201

0.2

Relu

3

151

0.1

Dense

Sigmoid

2

–

–

Physico-B

1D Convolution

Relu

2

201

0.3

Relu

3

151

0.2

Relu

5

101

0.1

Dense

Sigmoid

2

–

–

Physico-A

1D Convolution

Relu

2

201

0.4

Relu

3

151

0.3

Relu

5

101

0.2

Relu

7

51

0.1

Dense

Sigmoid

2

–

–

Ensemble

Dense

Relu

7

–

–

Sigmoid

2

–

–