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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph

Fig. 3

An example of the alignment between optical map and contig path. a An alignment corresponding to the generating of \(x_1\cdots x_5\) from \(s_1\cdots s_5\), where \(<x_1, s_1>\), \(<x_2, s_2>\), \(<x_4, s_3>\) and \(<x_5, s_5>\) are matching sites, while \(s_4\) is a missing site and \(x_3\) is a false-positive site. b The formal description of the alignment, where the symbol ‘–’ represents an Insertion or Deletion

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