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Table 2 Filling the gaps identified using real optical maps of E. coli genome

From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph

Gap Reference sequence OMACC nanoGapFiller
#contigs #bases #contigs #bases CPS NSS (%) #contigs #bases CPS NSS (%)
252486r–252036r 3 954 3 954 3 100 3 954 3 100
252408–252228r 4 11 4 11 4 100 4 11 4 100
252526r–252538 6 1256 6 1256 6 100 6 1256 6 100
252032–252526r 11 1127 11 1127 11 100 11 1127 11 100
252538–252408 14 20,922 14 20,922 14 100 14 20,922 14 100
252312r–252300r 15 5127 15 5127 13 99.06
252290r–251900r 21 18,454 31 19,755 20 96.59
252252r–252466r 26 13,442 37 13,877 21 97.69
252036r–252032 26 36,757 38 37,430 19 99.08
  1. Alignment method: SOMA2. Here, the symbol ‘–’ represents the failure of OMACC