Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph

BMC Bioinformatics

Table 2 Filling the gaps identified using real optical maps of E. coli genome

Gap	Reference sequence		OMACC				nanoGapFiller
Gap	#contigs	#bases	#contigs	#bases	CPS	NSS (%)	#contigs	#bases	CPS	NSS (%)
252486r–252036r	3	954	3	954	3	100	3	954	3	100
252408–252228r	4	11	4	11	4	100	4	11	4	100
252526r–252538	6	1256	6	1256	6	100	6	1256	6	100
252032–252526r	11	1127	11	1127	11	100	11	1127	11	100
252538–252408	14	20,922	14	20,922	14	100	14	20,922	14	100
252312r–252300r	15	5127	–	–	–	–	15	5127	13	99.06
252290r–251900r	21	18,454	–	–	–	–	31	19,755	20	96.59
252252r–252466r	26	13,442	–	–	–	–	37	13,877	21	97.69
252036r–252032	26	36,757	–	–	–	–	38	37,430	19	99.08

ISSN: 1471-2105