Table 6 The quality of filled gaps reported by nanoGapFiller at different settings of pruning threshold MinimalMatchingProbability
From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph
Species | Gap | MinimalMatchingProbability | |||
|---|---|---|---|---|---|
0 (%) | \(10^{-8}\) (%) | \(10^{-5}\) (default) (%) | \(10^{-2}\) (%) | ||
E. coli | 252312r–252486r | 87.22 | 87.22 | 87.22 | 87.22 |
E. coli | 252486r–252526r | 99.68 | 99.68 | 99.68 | 99.68 |
E. coli | 252510r–252292r | 98.87 | 98.87 | 98.87 | 96.55 |
E. coli | 252196–252226 | 99.66 | 99.66 | 99.66 | 99.66 |
S. coelicolor | 781738–781976r | 100.00 | 100.00 | 100.00 | 100.00 |
S. coelicolor | 781976r–781848r | 100.00 | 100.00 | 100.00 | 100.00 |
P. putida | 443944r–443818 | 99.88 | 99.88 | 99.88 | 99.88 |