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Table 8 Genome completeness improvement after filling gaps using OMACC and nanoGapFiller on 3 species

From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph

Species

Scaffold N50 (nt)

Before gap filling

Filling using OMACC

Filling using nanoGapFiller

E. coli

78,648

107,371

124,003

P. putida

127,879

154,105

154,105

S. coelicolor

108,454

108,454

108,454

  1. Here, the gaps are identified using real optical maps and alignment method SOMA2