Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph

BMC Bioinformatics

Table 9 Genome completeness improvement after filling gaps using OMACC and nanoGapFiller on 3 species

Species	Scaffold N50 (nt)
Species	Before gap filling	Filling using OMACC	Filling using nanoGapFiller
E. coli	78,648	78,648	133,054
P. putida	127,879	127,879	154,105
S. coelicolor	108,454	108,454	109,573

Here, the gaps are identified using real optical maps and alignment method refAligner

ISSN: 1471-2105