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Table 9 Genome completeness improvement after filling gaps using OMACC and nanoGapFiller on 3 species

From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph

Species Scaffold N50 (nt)
Before gap filling Filling using OMACC Filling using nanoGapFiller
E. coli 78,648 78,648 133,054
P. putida 127,879 127,879 154,105
S. coelicolor 108,454 108,454 109,573
  1. Here, the gaps are identified using real optical maps and alignment method refAligner