Fig. 3
From: Efficient iterative Hi-C scaffolder based on N-best neighbors
Alignment dotplots for pin_hic Ats scaffolds before and after mis-join detection. a pin_hic scaffolds alignment before misjoin detection and b pin_hic scaffolds alignment after misjoin detection. Both scaffolds are aligned to the VGP fAnaTes1.2 reference genome. Before misjoin detection, several chromosome-scale scaffolds are concatenated together, after the process, all the large misjoined scaffolds are corrected, the scaffolds are aligned to the reference genome more consistently