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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Efficient iterative Hi-C scaffolder based on N-best neighbors

Fig. 5

pin_hic Ats scaffolding results of multiple iterations. The runtime (dark green line) increases linearly with the iterations, while the scaffold N50 grows rapidly at the second and third round, it finally reaches 364 Mb at round 6. Even though the contigs are highly expanded, the corrected scaffold N50 keeps constant at 25 Mb since the third round

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