Fig. 2
From: Asc-Seurat: analytical single-cell Seurat-based web application
Asc-Seurat iteratively generates supporting plots based on the Seurat package through the analysis steps. Several plots are generated in each step of the analysis, allowing quick interpretation and parameter tuning. A Violin plot showing the distribution of the cells on the loaded data, allowing the exclusion of low-quality cells. B Elbow plot generated to support the choice of the number of PCs to be used during clustering. C UMAP plot showing the distribution of cells and clusters. D Heatmap showing the averaged gene expression in each cluster, providing a quick overview and selection of genes for further visual exploration. E UMAP plot showing the expression profile of a gene at the cell level. F, G Violin and dot plot, respectively, showing the expression profile at the cluster level and facilitating the inter-cluster comparison