From: NeuRank: learning to rank with neural networks for drug–target interaction prediction
Data sets | PMF | CMF | RBM | BRDTI | DeepDTIs | NeuRank | pNeuRank | lNeuRank | |
---|---|---|---|---|---|---|---|---|---|
DrugBank | AUC | 0.7816 | 0.8427 | 0.6935 | 0.8520 | 0.8278 | 0.8659 | 0.8683 | 0.8694 |
AUPR | 0.5371 | 0.6188 | 0.5607 | 0.6258 | 0.6043 | 0.6236 | 0.6285 | 0.6317 | |
Enzymes | AUC | 0.8259 | 0.8616 | 0.5093 | 0.8667 | 0.8538 | 0.9229 | 0.9268 | 0.9283 |
AUPR | 0.5183 | 0.5591 | 0.4380 | 0.5604 | 0.5325 | 0.5775 | 0.5826 | 0.5863 | |
Ion Channels | AUC | 0.8086 | 0.8640 | 0.6476 | 0.8754 | 0.8539 | 0.9092 | 0.9118 | 0.9142 |
AUPR | 0.5273 | 0.5601 | 0.4269 | 0.5896 | 0.5634 | 0.6098 | 0.6130 | 0.6151 | |
GPCRs | AUC | 0.5645 | 0.6328 | 0.5006 | 0.6379 | 0.5993 | 0.6557 | 0.6532 | 0.6598 |
AUPR | 0.3374 | 0.3742 | 0.3059 | 0.3865 | 0.3570 | 0.3988 | 0.4020 | 0.3781 | |
Nuclear Receptors | AUC | 0.6095 | 0.6537 | 0.5583 | 0.6610 | 0.6328 | 0.6645 | 0.6573 | 0.6522 |
AUPR | 0.2396 | 0.3517 | 0.1470 | 0.3845 | 0.3329 | 0.4882 | 0.4796 | 0.4605 |