From: Automatic consistency assurance for literature-based gene ontology annotation
 | Model-term | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | Consistent | (A) | (B) | (C) | ||||||||
 | P | R | F1 | P | R | F1 | P | R | F1 | P | R | F1 |
Basic system | 0.54 | 0.70 | 0.61 | 0.48 | 0.29 | 0.36 | 0.79 | 0.48 | 0.60 | 0.65 | 0.96 | 0.78 |
+Training Opt | 0.74 | 0.71 | 0.72 | 0.54 | 0.33 | 0.41 | 0.76 | 0.57 | 0.65 | 0.61 | 0.93 | 0.73 |
+SectionInfo | 0.69 | 0.65 | 0.67 | 0.46 | 0.35 | 0.40 | 0.77 | 0.52 | 0.62 | 0.52 | 0.96 | 0.68 |
+Opt & SectionInfo | 0.69 | 0.64 | 0.66 | 0.45 | 0.31 | 0.37 | 0.75 | 0.51 | 0.61 | 0.50 | 0.96 | 0.66 |
Baselines | First modelling task | |||||||||||
prior-biased classifier | 0.48 | 0.35 | 0.41 | 0.05 | 0.02 | 0.03 | 0.36 | 0.28 | 0.31 | 0.10 | 0.33 | 0.15 |
rule-based model | 0.53 | 0.38 | 0.44 | 0.09 | 0.04 | 0.06 | 0.41 | 0.29 | 0.34 | 0.18 | 0.99 | 0.30 |
 | Model-term | Model-code | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Overall | Consistent | (D) | Overall | |||||||||
P* | R* | F1 | P | R | F1 | P | R | F1 | P* | R* | F1 | |
Basic system | 0.64 | 0.64 | 0.64 | 0.75 | 0.50 | 0.60 | 0.31 | 0.58 | 0.41 | 0.52 | 0.52 | 0.52 |
+Training Opt | 0.69 | 0.69 | 0.69 | – | – | – | – | – | – | – | – | – |
+SectionInfo | 0.65 | 0.65 | 0.65 | 0.82 | 0.48 | 0.61 | 0.21 | 0.56 | 0.31 | 0.50 | 0.50 | 0.50 |
+Opt & SectionInfo | 0.63 | 0.63 | 0.63 | – | – | – | – | – | – | – | – | – |
Baselines | First modelling task | Second modelling task | ||||||||||
prior-biased classifier | 0.30 | 0.30 | 0.30 | 0.6 | 0.64 | 0.62 | 0.41 | 0.37 | 0.39 | 0.53 | 0.53 | 0.53 |
rule-based model | 0.36 | 0.36 | 0.36 | 0.6 | 0.64 | 0.62 | 0.41 | 0.37 | 0.39 | 0.53 | 0.53 | 0.53 |