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Table 2 The Pearson correlation coefficient between each metric and the reference-based quality score in the training data that was used to create mammalian model

From: EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

Quality metric

Pearson correlation

normN50

0.570

gap_perc

− 0.300

prop_pair_perc

0.204

FCD_err_in_contig

− 0.099

FCD_err_over_gap

− 0.295

low_fc_in_contig

− 0.521

low_fc_over_gap

− 0.579

links

− 0.594

clip

− 0.476

coll_repeat

− 0.071

low_read_cov

− 0.402

error_free_bases

0.701

norm_contig_number

0.025

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BMC Bioinformatics

ISSN: 1471-2105

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