Skip to main content

Table 2 The Pearson correlation coefficient between each metric and the reference-based quality score in the training data that was used to create mammalian model

From: EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

Quality metric Pearson correlation
normN50 0.570
gap_perc − 0.300
prop_pair_perc 0.204
FCD_err_in_contig − 0.099
FCD_err_over_gap − 0.295
low_fc_in_contig − 0.521
low_fc_over_gap − 0.579
links − 0.594
clip − 0.476
coll_repeat − 0.071
low_read_cov − 0.402
error_free_bases 0.701
norm_contig_number 0.025