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Table 1 Comparison between E-Flux + PC and E-Flux on predicted intra- and extra-cellular fluxes of E. coli growing on different carbon sources (Gerosa et al.)

From: Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism

Carbon Source All measured reactions Uptake /secretion
E-Flux + PC E-Flux E-Flux + PC E-Flux
Glycerol 15 6 8 2
Glucose 13 8 8 2
Acetate 14 7 6 4
Pyruvate 11 10 7 3
Gluconate 14 8 7 3
Succinate 17 4 8 2
Galactose 14 7 8 2
Fructose 18 3 8 2
  1. The table indicates the number of reactions for which each algorithm predicts values more similar to the measured ones. Full results are provided in Additional file 1