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Table 1 Comparison between E-Flux + PC and E-Flux on predicted intra- and extra-cellular fluxes of E. coli growing on different carbon sources (Gerosa et al.)

From: Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism

Carbon Source

All measured reactions

Uptake /secretion

E-Flux + PC

E-Flux

E-Flux + PC

E-Flux

Glycerol

15

6

8

2

Glucose

13

8

8

2

Acetate

14

7

6

4

Pyruvate

11

10

7

3

Gluconate

14

8

7

3

Succinate

17

4

8

2

Galactose

14

7

8

2

Fructose

18

3

8

2

  1. The table indicates the number of reactions for which each algorithm predicts values more similar to the measured ones. Full results are provided in Additional file 1
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BMC Bioinformatics

ISSN: 1471-2105

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