Table 1 A comparison of GraphOmics to other Web-based multi-omics systems
From: GraphOmics: an interactive platform to explore and integrate multi-omics data
Tool | Database | Omics types | Analysis types | Results presentation |
|---|---|---|---|---|
GraphOmics | Reactome | Transcripts Proteins Metabolites | Pathway enrichment: ORA, GSEA, PLAGE, reactome analysis service GO enrichment | Interactive tables Interactive pathway diagrams Interactive heatmaps Interactive clustering |
MetaboAnalyst | KEGG | Genes Metabolites | Pathway enrichment: ORA, Topology | Static tables Static pathway diagrams |
3Omics | KEGG (human only) | Transcripts Proteins Metabolites | Correlation analysis Coexpression profiles Phenotype analysis Pathway enrichment (ORA) GO enrichment | Static tables Static pathway diagrams Static heatmaps |
PaintOmics3 | KEGG | Transcripts Proteins Metabolites DNase-seq miRNA-seq | Pathway enrichment (ORA) Clustering of pathways | Interactive tables Interactive pathway diagrams Interactive heatmaps |