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Table 1 A comparison of GraphOmics to other Web-based multi-omics systems

From: GraphOmics: an interactive platform to explore and integrate multi-omics data

Tool Database Omics types Analysis types Results presentation
GraphOmics Reactome Transcripts
Proteins
Metabolites
Pathway enrichment: ORA, GSEA,
PLAGE, reactome analysis service
GO enrichment
Interactive tables
Interactive pathway diagrams
Interactive heatmaps
Interactive clustering
MetaboAnalyst KEGG Genes
Metabolites
Pathway enrichment: ORA, Topology Static tables
Static pathway diagrams
3Omics KEGG (human only) Transcripts
Proteins
Metabolites
Correlation analysis
Coexpression profiles
Phenotype analysis
Pathway enrichment (ORA)
GO enrichment
Static tables
Static pathway diagrams
Static heatmaps
PaintOmics3 KEGG Transcripts
Proteins
Metabolites
DNase-seq
miRNA-seq
Pathway enrichment (ORA)
Clustering of pathways
Interactive tables
Interactive pathway diagrams
Interactive heatmaps