Table 1 A comparison of GraphOmics to other Web-based multi-omics systems
From: GraphOmics: an interactive platform to explore and integrate multi-omics data
| Tool | Database | Omics types | Analysis types | Results presentation |
|---|---|---|---|---|
| GraphOmics | Reactome |
Transcripts Proteins Metabolites |
Pathway enrichment: ORA, GSEA, PLAGE, reactome analysis service GO enrichment |
Interactive tables Interactive pathway diagrams Interactive heatmaps Interactive clustering |
| MetaboAnalyst | KEGG |
Genes Metabolites | Pathway enrichment: ORA, Topology |
Static tables Static pathway diagrams |
| 3Omics | KEGG (human only) |
Transcripts Proteins Metabolites |
Correlation analysis Coexpression profiles Phenotype analysis Pathway enrichment (ORA) GO enrichment |
Static tables Static pathway diagrams Static heatmaps |
| PaintOmics3 | KEGG |
Transcripts Proteins Metabolites DNase-seq miRNA-seq |
Pathway enrichment (ORA) Clustering of pathways |
Interactive tables Interactive pathway diagrams Interactive heatmaps |