Table 5 Metric values obtained for interaction networks by CN and PP
From: GENPPI: standalone software for creating protein interaction networks from genomes
Id | CN expansion | Nodes | Medium degree | Density | Edges | Maximum degree |
|---|---|---|---|---|---|---|
STRING | – | 2213 | 180.83 | 0.082 | 200,088 | 901 |
f1 | Fixed | 2149 | 840.228 | 0.391 | 902,825 | 1316 |
f2 | Fixed | 2050 | 69.748 | 0.034 | 71,492 | 688 |
f3 | Fixed | 2057 | 270.628 | 0.132 | 278,341 | 689 |
f4 | Fixed | 1984 | 121.620 | 0.061 | 120,647 | 385 |
d1 | Dynamic | 2141 | 853.973 | 0.399 | 914,178 | 1355 |
d2 | Dynamic | 2045 | 91.318 | 0.045 | 93,373 | 705 |
d3 | Dynamic | 2045 | 289.11 | 0.141 | 295,615 | 772 |
d4 | Dynamic | 1976 | 132.947 | 0.067 | 131,356 | 469 |
d5 | Dynamic | 2058 | 272.208 | 0.132 | 280,102 | 713 |