Table 3 The performance of ensemble PPI-BioBERT-x10 on the test and validation set
Dataset | Interaction | P | R | F1 | ECE | SD | Support |
|---|---|---|---|---|---|---|---|
Test | Acetylation | 100.00 | 100.00 | 100.00 | 0.49 | 0.25 | 1 |
Test | Dephosphorylation | 50.00 | 16.67 | 25.00 | 0.67 | 0.40 | 6 |
Test | Methylation | 25.00 | 25.00 | 25.00 | 0.60 | 0.28 | 4 |
Test | Phosphorylation | 62.50 | 34.09 | 44.12 | 0.79 | 0.26 | 44 |
Test | Ubiquitination | 0.00 | 0.00 | 0.00 | – | – | 1 |
Test | ECE | – | – | - | 0.75 | – | 31 |
Test | Average SD | – | – | – | – | 0.28 | 31 |
Test | Macro avg | 47.50 | 35.15 | 38.82 | – | – | 56 |
Test | Micro avg | 58.06 | 32.14 | 41.38 | – | - | 56 |
Val | Acetylation | 100.00 | 100.00 | 100.00 | 0.53 | 0.16 | 1 |
Val | Dephosphorylation | 66.67 | 20.00 | 30.77 | 0.61 | 0.37 | 10 |
Val | Methylation | 0.00 | 0.00 | 0.00 | 0.53 | 0.29 | 1 |
Val | Phosphorylation | 77.78 | 66.67 | 71.79 | 0.78 | 0.26 | 21 |
Val | Ubiquitination | 0.00 | 0.00 | 0.00 | – | – | 1 |
Val | ECE | – | – | – | 0.73 | – | 24 |
Val | Average SD | – | – | – | – | 0.28 | 24 |
Val | Macro avg | 48.89 | 37.33 | 40.51 | – | – | 34 |
Val | Micro avg | 70.83 | 50.00 | 58.62 | – | – | 34 |