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Table 9 Results of noise levels, after noise reduction, in training data to verify if the PPI relationship is described in the abstract

From: Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT

Interaction type Correct Not—sure Total
Acetylation 4 1 5
Dephosphorylation 6 4 10
Deubiquitination 1 1 2
Methylation 4 6 10
Phosphorylation 6 4 10
Ubiquitination 2 3 5
Total 23 19 42
  1. The training data is randomly sampled (10 samples per interaction type unless the number of available training samples is lower) and verified by a human annotator