Skip to main content

Table 3 Matching of coherent regions with biologically known network topologies

From: \({\text{COSNet}}_i\): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes

Regions

rProteins

Region identifiers

Rabbit—60S rProteins

IntCryOmics_6gz5_dt12_IN50_WL10

 Region 1

eL32 uL4 eL14 eL20 eL6 uL13 eL28 eL33

LSU-TopRegion

 Region 2

eL13 eL15 eL36 uL15 uL29 uL23 eL8 uL2

LSU-Center.2

 Region 10

eL13 eL31 uL22 eL39 eL37 uL29 uL4

LSU-PET.1

 Region 11

uL11 eL40 uL10 uL6

LSU-P-Stalk

 Region 12

eL18 uL4 eL39 uL24 eL28 uL30

LSU-PET.2

 Region 17

eL20 eL21 eL29 uL30 uL18

LSU-Interface2Adjacent.1

 Region 16

eL13 eL15 eL36 uL15 uL1 uL29 eL8

LSU-Center.1

 Region 19

eL14 eL20 eL21 uL16 uL18

LSU-Interface2Adjacent.2

Subunit interface rProteins

 Region 5

eL13 eL15 uL5 eL42 eL21 uS13 uL18

Interface2

 Region 6

uS12 eS8 eL19 uS15 uS17 uS8

Interface3.2

 Region 8

eL27 eL30 eL43 uL2 eL34 uS15

Interface3.1

 Region 9

uL3 eL24 eS6 uL14

Interface1

 Region 18

uS12 eS8 eL19 eL22 uS17

Interface3.2

40S rProteins

 Region 3

eS24 eS4 eS30 uS2 eS21 uS4 uS5 uS8

SSU-Interface3Adjacent

 Region 4

eS25 uS7 eS28 eS1 uS9 eS26 uS11

SSU-Interface1Adjacent

 Region 7

uS10 eS10 uS14 uS3 eS17 uS2

SSU-CentralHub

 Region 13

eS7 uS15 eS21 eS27 uS5 uS8

SSU-Center

 Region 14

eS12 uS3 eS31 eS10

SSU-BottomTail

 Region 15

uS7 uS19 eS19 uS13 uS9

SSU-Interface2Adjacent

Yeast—60S rProteins

IntCryOmics_6snt_dt12_IN50_WL9

 Region 2

eL8 uL2 eL28 eL36 uL13 uL15 eL43

LSU-Interface3Adjacent.1

 Region 3

eL31 uL22 eL6 eL20 eL33 uL14 uL16

LSU-TopRegion.1

 Region 6

eL39 eL37 uL29 uL4 eL28 uL13 uL18

LSU-PET

 Region 11

eL20 eL21 uL10 uL30 uL5

LSU-Interface2Adjacent.1

 Region 12

eL6 eL20 eL40 uL14 uL16 uL6

LSU-TopRegion.1

 Region 15

eL34 eL27 eL30 uL2 eL43

LSU-Interface3Adjacent.2

 Region 16

eL20 eL21 uL30 eL29 uL5

LSU-Interface2Adjacent.2

 Region 17

eL6 eL33 uL14 uL16 eL32

LSU-TopRegion.3

 Region 18

uL24 uL30 uL4 eL28 uL13 uL18

LSU-Center

Subunit interface rProteins

 Region 1

eL19 uS12 eS7 uS17 eS8 uS5 uS15

Interface3.2

 Region 4

eL21 uL11 uL5 uS13 uS7 eL42 eS25

Interface2

 Region 5

eL24 eS6 uS2 uS4 eS24 eS4 eS30

Interface1

 Region 8

eS7 eS21 eL27 eL30 eS27 uS5 uS15

Interface3.1

 Region 13

eS6 uL23 uL3 eL24

Interface1

40S rProteins

 Region 7

uS10 eS10 uS14 uS3 eS17

SSU-CentralHub

 Region 9

eS1 uS7 eS26 uS11 eS28

SSU-Interface3Adjacent

 Region 10

uS8 eS19 uS13 uS7 uS9 eS25

SSU-Interface2Adjacent

 Region 14

eS10 eS12 uS3 eS31

SSU-BottomTail