Table 2 Best-performing harmonisation strategy by annotation set, based on 6-fold cross-validation over the training set
Annotation set | Proper | Extended |
|---|---|---|
CHEBI | spans-first | spans-first |
CL | spans-first | ids-only |
GO_BP | spans-first | ids-only |
GO_CC | spans-first | spans-first |
GO_MF | spans-/ids-first | spans-first |
MOP | spans-/ids-first | ids-first |
NCBITaxon | ids-first | ids-first |
PR | spans-only | spans-only |
SO | ids-only | ids-only |
UBERON | spans-first | spans-first |