Table 1 The features used in different methods
From: Class similarity network for coding and long non-coding RNA classification
Feature \Method | mRNN | LncRNAnet | RNAsamba | LncFinder | CPPred | DeepCPP | Class Similarity Network |
|---|---|---|---|---|---|---|---|
Maximum ORF length | \(\checkmark\) | \(\checkmark\) | \(\checkmark\) | \(\checkmark\) | |||
ORF coverage | \(\checkmark\) | \(\checkmark\) | \(\checkmark\) | ||||
Nucleotide bias | \(\checkmark\) | \(\checkmark\) | |||||
k-mer | \(\checkmark\) | \(\checkmark\) | \(\checkmark\) | ||||
k-merscore | \(\checkmark\) | \(\checkmark\) | \(\checkmark\) | \(\checkmark\) | |||
Fikett score | \(\checkmark\) | \(\checkmark\) | |||||
Sequence encoding | \(\checkmark\) \(^{1}\) | \(\checkmark\) \(^{2}\) | \(\checkmark\) \(^{3}\) | ||||
Other | \(\checkmark\) \(^{4}\) | \(\checkmark\) \(^{5}\) |