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Table 1 Parameters of synthetic data generation and their values

From: Aristotle: stratified causal discovery for omics data

Parameter

Value

Number of features

100,000

Number of feature clusters

2500

Number of pathways

100

Feature noise

0.05

Fraction of positive samples

0.2

Number of causal feature clusters

2, 3, 4, 5

Outcome noise

0, 0.05, 0.1, 0.2

Number of positive samples

75, 100, 125, 150

  1. The default values are underlined