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Table 3 Performance of DEGnext on biologically validated data (Q) of 8 testing or untrained datasets using transfer learning

From: DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning

Dataset

Accuracy

Recall

Precision

F-measure

MCC

BLCA

95.69

95.69

95.76

0.96

0.91

CHOL

98.26

98.26

98.49

0.98

0.94

COAD

84.21

84.21

88.44

0.84

0.72

ESCA

92.97

92.97

94.68

0.93

0.61

HNSC

98.44

98.44

98.49

0.98

0.96

KICH

98.75

98.75

98.79

0.99

0.97

READ

86.05

86.05

89.23

0.86

0.75

STAD

97.77

97.77

97.89

0.98

0.95