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Table 4 Analysis of GO enrichment of predicted UR and DR genes for BRCA and UCEC datasets

From: DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning

Dataset

GO ID/attribute

p value

q value

BRCA

Cellular component morphogenesis

1.72E−06

8.39E−03

Cellular response to endogenous stimulus

5.19E−06

8.39E−03

Cell adhesion

5.32E−06

8.39E−03

Biological adhesion

6.15E−06

8.39E−03

Cell morphogenesis

9.77E−06

1.07E−02

Negative regulation of response to stimulus

1.25E−05

1.14E−02

Negative regulation of intracellular signal transduction

4.77E−05

3.72E−02

UCEC

Reproductive process

1.19E−05

2.61E−02

Reproduction

1.24E−05

2.61E−02

Positive regulation of plasminogen activation

3.18E−05

4.46E−02