Fig. 6
From: LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences
Run time and memory of LaRA 2 in relation to the sequence length. We used the sequences from BRAliBase 2.1 including SRP as well as Telomerase RNA and Mollicutes’ 16S rRNA from RNAStrAlign database [11]. Each of the 560 alignments consists of 5 sequences, of which the average length is denoted on the x-axis. The y-axis shows the run time or peak memory consumption respectively for each alignment computation, including the calculation of the base pair probabilities. We averaged over 10 runs per alignment in order to obtain more accurate measurements