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Table 2 Run time and memory consumption for the computation of a multiple alignment with 838 sequences of 5S rRNA Plastids, taken from the 5SrRNAdb database [52]

From: LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences

  # threads LaRA 2 + MAFFT LaRA 2 + T-Coffee LaRA LocARNA RNAmount-Align MAFFT
Time [min:sec] 16 26:28 54:14 na 419:59 na 00:04
1 237:00 151:17 3424:57 1260:50 212:30 00:02
Memory [MB] 16 2059 3917 na 3003 na 357
1 1362 3908 4172 453 3923 36
  1. We compare different programs using 1 or 16 threads. The calculation of the base pair probabilities is included