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Table 1 List of gene clusters identified by SweepCluster for ecoSNPs in V. cyclitrophicus

From: SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

Chr ClusterID in Ref First SNP Last SNP Cluster size Cluster length p value Gene loci range
chr1 1 2,999,463 3,017,933 50 18,471  < 10–8 FAZ90_RS13520-FAZ90_RS13590
chr1 3 3,022,425 3,038,568 53 16,144  < 10–8 FAZ90_RS13690-FAZ90_RS13840
chr1 3 3,044,230 3,045,684 63 1455  < 10–8
chr1 3 3,052,101 3,059,345 158 7245  < 10–8
chr2 12 307,956 307,979 6 24  < 10–8 FAZ90_RS16555
chr2 11 353,294 354,071 27 778  < 10–8 FAZ90_RS16800
chr2 10 533,257 533,284 6 28  < 10–8 FAZ90_RS17530
chr2 8 744,397 745,417 35 1021  < 10–8 FAZ90_RS18465-FAZ90_RS18470
chr2 13 1,514,577 1,525,409 36 10,833  < 10–8 FAZ90_RS21880-FAZ90_RS21930
chr2 7 1,642,124 1,642,167 2 44 1.2 × 10–5 FAZ90_RS22415
chr2 6 1,685,459 1,686,320 103 862  < 10–8 FAZ90_RS22615