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Table 1 List of gene clusters identified by SweepCluster for ecoSNPs in V. cyclitrophicus

From: SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

Chr

ClusterID in Ref

First SNP

Last SNP

Cluster size

Cluster length

p value

Gene loci range

chr1

1

2,999,463

3,017,933

50

18,471

 < 10–8

FAZ90_RS13520-FAZ90_RS13590

chr1

3

3,022,425

3,038,568

53

16,144

 < 10–8

FAZ90_RS13690-FAZ90_RS13840

chr1

3

3,044,230

3,045,684

63

1455

 < 10–8

chr1

3

3,052,101

3,059,345

158

7245

 < 10–8

chr2

12

307,956

307,979

6

24

 < 10–8

FAZ90_RS16555

chr2

11

353,294

354,071

27

778

 < 10–8

FAZ90_RS16800

chr2

10

533,257

533,284

6

28

 < 10–8

FAZ90_RS17530

chr2

8

744,397

745,417

35

1021

 < 10–8

FAZ90_RS18465-FAZ90_RS18470

chr2

13

1,514,577

1,525,409

36

10,833

 < 10–8

FAZ90_RS21880-FAZ90_RS21930

chr2

7

1,642,124

1,642,167

2

44

1.2 × 10–5

FAZ90_RS22415

chr2

6

1,685,459

1,686,320

103

862

 < 10–8

FAZ90_RS22615