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Table 3 Groupwise ontology-based semantic similarity measures implemented by SML and HESML (this work), which are mainly used for genomics applications based on the GO ontology

From: HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

Groupwise similarity measures

SML

HESML

Maximum [5, formula 2]

 

x

Average [104, formula 1]

 

x

Best-Match-Average

(BMA) [104, formula 2]

 

x

SimUI [100]

x

x

SimLP [100]

x

x

SimGIC [105]

x

x

Ali and Deane [18]

x

 

Lee et al. [106]

x

 

Term Overlap (TO) [107]

x

 

Normalized Term

Overlap (NTO) [107]

x

 

NTO\(\_\)MAX [107]

x

Â