Skip to main content

Table 3 Groupwise ontology-based semantic similarity measures implemented by SML and HESML (this work), which are mainly used for genomics applications based on the GO ontology

From: HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

Groupwise similarity measures SML HESML
Maximum [5, formula 2]   x
Average [104, formula 1]   x
Best-Match-Average
(BMA) [104, formula 2]
  x
SimUI [100] x x
SimLP [100] x x
SimGIC [105] x x
Ali and Deane [18] x  
Lee et al. [106] x  
Term Overlap (TO) [107] x  
Normalized Term
Overlap (NTO) [107]
x  
NTO\(\_\)MAX [107] x