BMC Bioinformatics

Table 5 F1-scores obtained with CNNFold-mix for different RNA families

From: RNA secondary structure prediction with convolutional neural networks

Family	RNAStrAlign			ArchiveII
Family	Lenghts	#Samples	F1-score	Lenghts	#Samples	F1-score
All	30–1851	30451	0.932	28–2968	3975	0.897
16SrRNA	54–1851	11620	0.855	73–1995	110	0.639
5SrRNA	104–132	9385	0.992	102–135	1283	0.972
tRNA	59–95	6443	0.996	54–93	557	0.937
Grp 1 Intron	163–615	1502	0.903	210–736	98	0.722
SRP	30–553	468	0.787	28–533	928	0.798
tmRNA	102–437	572	0.830	102–437	462	0.871
RNaseP	189–486	434	0.832	120–486	454	0.824
telomerase	382–559	37	0.615	382–559	37	0.755
23SrRNA	–	–	–	242–2968	35	0.489
Grp 2 Intron	–	–	–	619–780	11	0.591

Model has been trained on RSA-tr and tested on RSA-ts and ArchiveII

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com