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Table 1 Effect of erroneous sequences on perplexity for multiple k-values on reads: these reads are generated by NanoSim using the E.coli reference genome

From: Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing

k

\(PPL_{err}\)

\(PPL_{corr}\)

\(PPL_{total}\)

15

1073.6

943.5

952.9

37

1072.8

944.5

946.8

81

1072.8

973.4

956.3

  1. \(PPL_{err}\), \(PPL_{corr}\), and \(PPL_{total}\) denote the perplexity scores on erroneous and error-free reads, and the entire dataset (i.e., erroneous and error-free sequences)
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BMC Bioinformatics

ISSN: 1471-2105

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