Table 5 Top 15 predicted lncRNAs associated with breast cancer
From: gGATLDA: lncRNA-disease association prediction based on graph-level graph attention network
Disease similarity based on gene–gene interaction network | Disease similarity based on disease semantic | ||||
|---|---|---|---|---|---|
Rank | lncRNA | Evidence | Rank | lncRNA | Evidence |
1 | KCNQ1OT1 | Lnc2Cancer 3.0 | 1 | TRAF3IP2-AS1 | PMID: 30157476 |
2 | UCA1 | Lnc2Cancer 3.0 | 2 | DLX6-AS1 | Lnc2Cancer 3.0 |
3 | MIAT | Lnc2Cancer 3.0 | 3 | MINA | PMID:Â 30254753 |
4 | MINA | PMID:Â 30254753 | 4 | KCNQ1OT1 | Lnc2Cancer 3.0 |
5 | NPTN-IT1 | Lnc2Cancer 3.0 | 5 | NEAT1 | Lnc2Cancer 3.0 |
6 | LincRNA-p21 | Lnc2Cancer 3.0 | 6 | LincRNA-p21 | Lnc2Cancer 3.0 |
7 | IGF2-AS | PMID:Â 33175607 | 7 | UCA1 | Lnc2Cancer 3.0 |
8 | DRAIC | LncRNADisease v2.0 | 8 | SOX2-OT | Lnc2Cancer 3.0 |
9 | NEAT1 | Lnc2Cancer 3.0 | 9 | NPTN-IT1 | Lnc2Cancer 3.0 |
10 | PCAT29 | PMID:Â 32521844 | 10 | HULC | Lnc2Cancer 3.0 |
11 | HULC | Lnc2Cancer 3.0 | 11 | CRNDE | LncRNADisease v2.0 |
12 | CCND1 | LncRNADisease v2.0 | 12 | TUSC7 | Lnc2Cancer 3.0 |
13 | SPRY4-IT1 | Lnc2Cancer 3.0 | 13 | 7SK | unconfirmed |
14 | SOX2-OT | Lnc2Cancer 3.0 | 14 | WT1-AS | LncRNADisease v2.0 |
15 | TUSC7 | Lnc2Cancer 3.0 | 15 | ESCCAL-1 | unconfirmed |