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Fig. 5 | BMC Bioinformatics

Fig. 5

From: ASAP 2: a pipeline and web server to analyze marker gene amplicon sequencing data automatically and consistently

Fig. 5

An example of output results generated by the pipeline ASAP 2. The Atacama soil microbiome dataset from QIIME 2 tutorial was analyzed. The results include the alpha diversity in multiple indices and rarefaction, correlation of alpha diversity and environmental factors, correlation of alpha diversity and groups, beta diversity in multiple matrix, taxonomic classification at all taxonomic levels, community composition bar chart, phylogenetic tree, variable selection analysis and CCA / RDA analysis. The result files in QZA or QZV format can be viewed in a web browser using QIIME 2 View (https://view.qiime2.org). In addition, certain features of the results such as sample color are customizable. CCA: Canonical Correspondence Analysis; RDA: Redundancy Analysis

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BMC Bioinformatics

ISSN: 1471-2105

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