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Fig. 4 | BMC Bioinformatics

Fig. 4

From: ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes

Fig. 4

Feature-associated data visualization using chromoMap. A Visualization of genomic and epigenomic information for chromosomes 4 and 5 in barley (Hordeum vulgare). Vertical bars show the number of protein coding genes per genomic window (windows with ≥ 50 genes shown in yellow), and differential methylation (-Log10 (FDR)) of ms-GBS markers between plants grown under control conditions and under salt stress (75 mM NaCl) (Green: Hypermethylated markers under salt stress. Red: Hypomethylated markers under salt stress) European Nucleotide Archive (ENA) (Study Accession Number: PRJEB27251) [14]. B gene expression differences between healthy and breast cancer patients (NCBI Gene Expression Omnibus id: GSE59055) [15]. Solid black chromosomes depict difference in gene expression (logFC) between the healthy and cancer diagnose cohorts, while empty chromosomes depict the mean normalized expression for individuals within the control (Green) diseased (Red) cohorts

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