From: Assigning protein function from domain-function associations using DomFun
Domain classification | FA | Association + combination methods | |||
---|---|---|---|---|---|
HyI + Fis | PCC+Sto | Jac + Sto | Sim+Sto | ||
\(F_{max}\) values from PR curves (domain-FunFys associations for CAFA 3 target proteins) | |||||
FunFams | GOMF | 0.608 | 0.553 | 0.515 | 0.624 |
GOBP | 0.452 | 0.444 | 0.443 | 0.492 | |
GOCC | 0.542 | 0.529 | 0.529 | 0.602 | |
Superfamilies | GOMF | 0.314 | 0.347 | 0.350 | 0.384 |
GOBP | 0.099 | 0.172 | 0.238 | 0.174 | |
GOCC | 0.254 | 0.353 | 0.398 | 0.340 |