Skip to main content

Table 3 \(F_{max}\) top values: DomFun (Simpson + Stouffer) vs. CAFA 3 methods

From: Assigning protein function from domain-function associations using DomFun

Ontology

Type

Mode

Top DomFun \(F_{max}\)

DomFun coverage

Top CAFA 3 \(F_{max}\)

CAFA 3 coverage

GOMF

1

1

0.357

0.71

0.618

1

GOMF

1

2

0.567

0.41

0.622

0.02

GOMF

2

1

0.431

0.49

0.622

1

GOMF

2

2

0.624

0.49

0.623

0.88

GOBP

1

1

0.275

0.46

0.397

1

GOBP

1

2

0.402

0.46

0.418

0.62

GOBP

2

1

0.37

0.55

0.598

1

GOBP

2

2

0.492

0.55

0.64

0.83

GOCC

1

1

0.412

0.49

0.615

1

GOCC

1

2

0.606

0.49

0.908

0

GOCC

2

1

0.422

0.51

0.615

1

GOCC

2

2

0.602

0.51

0.825

0

  1. Type 1: no knowledge, type 2: limited knowledge. Mode 1: full evaluation, mode 2: partial evaluation