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Fig. 1 | BMC Bioinformatics

Fig. 1

From: CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images

Fig. 1

CellSeg pipeline. Overview of CellSeg software with following steps. (1) Extract nuclear channel and crop images to segment. (2) Segment each image crop with CellSeg. (3) Stitch together segmented crops. (4) Expand boundaries of cells using mask expansion. (5) Perform lateral bleed compensation, then compute and output single-cell statistics for N markers

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BMC Bioinformatics

ISSN: 1471-2105

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