Genome version | Task | Unbalancing ratios for different setups | |||||
---|---|---|---|---|---|---|---|
 |  | Unbalanced setup | Full-balanced setup [34] | ||||
 |  | HepG2 | HelaS3 | K562 | GM12878 | Average | All cell lines |
hg19 | IE versus IP | 2.78 | 2.46 | 2.41 | 2.62 | 2.57 | 1 |
AP versus IP | 8.39 | 7.34 | 8.22 | 6.83 | 7.70 | 2 | |
AE versus IE | 23.59 | 17.42 | 38.47 | 9.78 | 22.32 | 2 | |
AE versus AP | 7.83 | 5.83 | 11.27 | 3.76 | 7.17 | 1 | |
AE + AP versus else | 18.49 | 17.76 | 20.47 | 15.29 | 18.00 | 8 | |
Avg per cell line | 12.22 | 10.16 | 16.17 | 7.66 | 11.55 | 2.8 |
 |  | Unbalanced setup |  | ||||
---|---|---|---|---|---|---|---|
 |  | HepG2 | K562 | GM12878 | Average |  |  |
hg38 | IE versus IP | 1.53 | 1.51 | 1.66 | 1.57 | Â | Â |
AP versus IP | 6.09 | 6.98 | 6.12 | 6.39 | Â | Â | |
AE versus IE | 7.82 | 10.46 | 4.46 | 7.58 | Â | Â | |
AE versus AP | 1.96 | 2.27 | 1.21 | 1.81 | Â | Â | |
Avg per cell line | 4.35 | 5.30 | 3.36 | 4.34 | Â | Â |