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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Primary case inference in viral outbreaks through analysis of intra-host variant population

Fig. 3

Distribution of PYCIVO distance measurements among our dataset. Most sample pairs fall either well below or above the empirically derived Tmax value of 2000. Evolutionary distances used in PYCIVO versus the minimum hamming distances between samples. The threshold for transmission is indicated by vertical and horizontal lines. Only 827 out of 5460 cases in our study were linked by the PYCIVO distance metric, 817 of these are also linked by minimum hamming distance

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