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Fig. 6 | BMC Bioinformatics

Fig. 6

From: ScreenGarden: a shinyR application for fast and easy analysis of plate-based high-throughput screens

Fig. 6

Cut-offs can be defined based on the distribution of screen data. Screens which result in a high number of growth defects are more accurately described using a bimodal mixture model and are characterised by a ‘central peak’ and a second ‘hit peak’. Bimodal mixture models can be fitted automatically to screens with many growth defects using ScreenGarden and produce a component plot (A) and a fit plot (B) as well as q-values for each LGR. If q ≥ 0.5, the data is predicted to follow the distribution of component 2 and thus LGRs account for predicted growth defects. C Mixture model, Z-transformation and empirically defined LGR cut-offs were compared for the Nop10 Synthetic Physical Interactions dataset. Cut-off definition using a bimodal mixture model predicted more than twice the number of growth defects compared to Z-transformation or LGR-based thresholds

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