Function | HiCmapTools | HiCPro [7] | Juicer [8], Juicebox [9] | gcMapExplorer [10] |
---|
Generate HiC map | x | o | o | x |
Visualization | x | x | o | o |
Format transformation | x | o | o | o |
Extra submap | o | x | dump | x |
Query HiC map | o | MAKE_VIEWPOINTS.PY* | x | x |
- *Generates a BED profile from a specified viewpoint (similar to the -bait query mode of HicmapTools)