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Table 1 Comparison between HiCmapTools and other current tools applied to HiC sequencing datasets

From: HiCmapTools: a tool to access HiC contact maps

Function

HiCmapTools

HiCPro [7]

Juicer [8], Juicebox [9]

gcMapExplorer [10]

Generate HiC map

x

o

o

x

Visualization

x

x

o

o

Format transformation

x

o

o

o

Extra submap

o

x

dump

x

Query HiC map

o

MAKE_VIEWPOINTS.PY*

x

x

  1. *Generates a BED profile from a specified viewpoint (similar to the -bait query mode of HicmapTools)