Assembly | Contigs | k-mer completeness (%) | Gene completeness (%) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total (Mb) | No | N50 (Mb) | All | Hap SK | Hap B73 | PPV* | Comp | Dup | Frag | Mis | |
Reference | |||||||||||
SK | 2154 | 671 | 223.2 | 76.15 | 100.00 | 0.00 | NA | 96.1 | 6.0 | 1.3 | 2.6 |
B73 | 2104 | 267 | 220.8 | 75.97 | 0.00 | 100.00 | NA | 95.5 | 6.1 | 1.5 | 3.0 |
B73 + SK | 4258 | 938 | 223.2 | 100.00 | 100.00 | 100.00 | NA | 96.9 | 94.8 | 0.9 | 2.2 |
Hifiasm | |||||||||||
Hap1 | 2160 | 800 | 77.3 | 75.69 | 54.91 | 48.75 | 53.16 | 94.4 | 8.6 | 1.0 | 4.6 |
Hap2 | 2160 | 673 | 72.4 | 75.89 | 48.47 | 55.35 | 53.12 | 95.2 | 8.3 | 0.8 | 4.0 |
Hap1 + Hap2 | 4319 | 1473 | 75.5 | 99.86 | 99.75 | 99.67 | 53.14 | 97.6 | 94.2 | 0.2 | 2.2 |
Hifiasm + Hi-C | |||||||||||
HapSK | 2134 | 671 | 96.9 | 75.98 | 97.53 | 2.49 | 97.53 | 96.4 | 5.3 | 0.9 | 2.7 |
HapB73 | 2124 | 690 | 48.0 | 76.02 | 2.81 | 97.76 | 97.18 | 96.1 | 5.8 | 1.2 | 2.7 |
HapSK + hapB73 | 4258 | 1361 | 69.6 | 99.96 | 99.89 | 99.93 | 97.36 | 97.7 | 94.9 | 0.2 | 2.1 |
Trio | |||||||||||
HapSK | 2160 | 1118 | 60.0 | 76.06 | 99.62 | 0.58 | 99.43 | 96.1 | 7.6 | 0.8 | 2.7 |
HapB73 | 2118 | 811 | 35.6 | 75.98 | 0.49 | 99.85 | 99.51 | 96.5 | 7.2 | 1.2 | 2.9 |
HapSK + hapB73 | 4278 | 1929 | 44.9 | 99.90 | 99.65 | 99.92 | 99.47 | 97.8 | 94.9 | 0.4 | 2.1 |
gcaPDA | |||||||||||
HapSK | 2162 | 767 | 55.3 | 76.19 | 98.87 | 1.78 | 98.25 | 95.9 | 6.5 | 1.4 | 2.7 |
HapB73 | 2159 | 699 | 57.0 | 76.41 | 2.25 | 99.46 | 97.77 | 95.4 | 6.2 | 1.6 | 3.0 |
HapSK + hapB73 | 4320 | 1466 | 55.3 | 99.67 | 99.06 | 99.56 | 98.01 | 96.9 | 94.5 | 1.0 | 2.2 |