From: ProtPlat: an efficient pre-training platform for protein classification based on FastText
Model | Archaea | Eukaryotes | Gram-negative | Gram-positive | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Pre | Rec | F1 | Pre | Rec | F1 | Pre | Rec | F1 | Pre | Rec | F1 | |
SignalP 5.0 | 0.771 | 0.660 | 0.711 | 0.671 | 0.729 | 0.699 | 0.742 | 0.733 | 0.737 | 0.600 | 0.840 | 0.700 |
DeepSig | – | – | – | 0.604 | 0.624 | 0.614 | 0.131 | 0.600 | 0.215 | 0.073 | 0.760 | 0.133 |
LipoP | 0.484 | 0.480 | 0.482 | 0.159 | 0.343 | 0.217 | 0.327 | 0.733 | 0.452 | 0.153 | 0.600 | 0.244 |
Philius | 0.425 | 0.580 | 0.491 | 0.151 | 0.619 | 0.243 | 0.106 | 0.700 | 0.184 | 0.054 | 0.600 | 0.099 |
Phobius | 0.395 | 0.540 | 0.456 | 0.226 | 0.667 | 0.338 | 0.098 | 0.644 | 0.170 | 0.054 | 0.600 | 0.099 |
PolyPhobius | 0.395 | 0.560 | 0.463 | 0.176 | 0.681 | 0.280 | 0.097 | 0.644 | 0.169 | 0.060 | 0.680 | 0.110 |
PrediSi | – | – | – | 0.273 | 0.652 | 0.385 | 0.144 | 0.722 | 0.240 | 0.062 | 0.640 | 0.113 |
PRED-LIPO | 0.455 | 0.480 | 0.467 | 0.069 | 0.095 | 0.080 | 0.212 | 0.467 | 0.292 | 0.216 | 0.760 | 0.336 |
PRED-SIGNAL | 0.489 | 0.800 | 0.607 | 0.066 | 0.224 | 0.102 | 0.076 | 0.444 | 0.130 | 0.060 | 0.680 | 0.110 |
PRED-TAT | 0.493 | 0.580 | 0.533 | 0.080 | 0.410 | 0.134 | 0.125 | 0.711 | 0.213 | 0.082 | 0.720 | 0.147 |
Signal-3L 2.0 | – | – | – | 0.322 | 0.648 | 0.430 | 0.113 | 0.644 | 0.192 | 0.074 | 0.800 | 0.135 |
Signal-CF | – | – | – | 0.105 | 0.652 | 0.181 | 0.102 | 0.689 | 0.178 | 0.059 | 0.720 | 0.109 |
SOSUIsignal | – | – | – | 0.037 | 0.176 | 0.061 | 0.040 | 0.267 | 0.070 | 0.018 | 0.200 | 0.033 |
SPEPlip | – | – | – | 0.366 | 0.710 | 0.483 | 0.276 | 0.611 | 0.380 | 0.187 | 0.680 | 0.293 |
SPOCTOPUS | – | – | – | 0.120 | 0.390 | 0.184 | 0.067 | 0.467 | 0.117 | 0.056 | 0.640 | 0.103 |
TOPCONS2 | 0.366 | 0.480 | 0.415 | 0.107 | 0.371 | 0.166 | 0.081 | 0.544 | 0.141 | 0.022 | 0.240 | 0.040 |
ProtPlat | 0.823 | 0.627 | 0.712 | 0.636 | 0.773 | 0.698 | 0.728 | 0.791 | 0.758 | 0.550 | 0.668 | 0.603 |