Skip to main content

Table 1 Power comparison across genetic diversity and marker types. Each estimate is an average of 11 populations for each diversity level, with \(l = 3 \;{\text{cM}}\). SNP refers to the biallelic model, IBD refers to the ancestral, multiallelic model and Hap refers to the haplotype-based approach. For detection power and QTL precision, higher numbers indicate a better model, while for false positive rate and accuracy, lower numbers indicate a better model

From: Multiallelic models for QTL mapping in diverse polyploid populations

 

Detection power

False positive rate

QTL precision

Accuracy (cM from true position)

SNP

IBD

Hap

SNP

IBD

Hap

SNP

IBD

Hap

SNP

IBD

Hap

NAM1

0.939

1

1

0.012

0.066

0.055

0.917

0.850

0.941

0.593

0.161

0.121

NAM3

0.909

0.970

0.970

0.008

0.065

0.054

0.865

0.814

0.886

0.550

0.192

0.130

NAM7

0.545

0.939

0.909

0.005

0.064

0.040

0.697

0.842

0.879

0.687

0.325

0.331

NAM10

0.606

0.848

0.818

0.005

0.055

0.038

0.773

0.932

0.850

0.665

0.312

0.621