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Table 6 Prediction times in seconds (without time for calculating PSSMs, HHblits, and SPOT-Contact) for ProteinUnet2, SPOT-1D, and SAINT on all test sets

From: Lightweight ProteinUnet2 network for protein secondary structure prediction: a step towards proper evaluation

Dataset

ProteinUnet2

SPOT-1D

SAINT

TEST2016

229

11,796

252

TEST2018

88

3644

98

CASP12

59

486

64