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Table 5 Measures of F1 score, classification accuracy, precision, recall, MCC and ROC-AUC obtained on the test set of the ligands classes

From: Hierarchical representation for PPI sites prediction

 

F1

Accuracy

Precision

Recall

MCC

AUC-ROC

b

u

b

u

b

u

b

u

b

u

b

u

2-layer architecture—ligands

Contact Map 6 Ă…

0.390

0.364

0.247

0.232

0.247

0.229

1.00

1.00

0.00

0.014

0.836

0.831

Contact Map 8 Ă…

0.390

0.356

0.247

0.230

0.247

0.228

1.00

1.00

0.00

0.010

0.768

0.779

Contact Map 10 Ă…

0.390

0.366

0.247

0.235

0.247

0.229

1.00

1.00

0.00

0.012

0.811

0.765

Contact Map 12 Ă…

0.390

0.364

0.247

0.228

0.247

0.228

1.00

1.00

0.00

0.00

0.745

0.662

Hierarchical Representation 6Ă…

0.390

0.385

0.247

0.290

0.247

0.243

1.00

1.00

0.00

0.09

0.790

0.779

Hierarchical Representation 8Ă…

0.390

0.382

0.247

0.283

0.247

0.241

1.00

1.00

0.00

0.08

0.830

0.815

Hierarchical Representation 10Ă…

0.390

0.375

0.247

0.263

0.247

0.239

1.00

1.00

0.00

0.06

0.852

0.858

Hierarchical Representation 12Ă…

0.390

0.364

0.247

0.228

0.247

0.228

1.00

1.00

0.00

0.00

0.871

0.861