Name | Function | Type | Description |
---|---|---|---|
DL Per Score | Per(G) | Periodicity | A measure of abundance profile periodicity as defined by Eq. (3)\(^*\) |
DL Per p-val | \(p_{per}(G)\) | Periodicity | An empirical p-value measuring the probability that a random abundance profile will exhibit a DL Per Score larger than the actual gene’s expression pattern |
JTK Per p-val | \(p_{jtk}(G)\) | Periodicity | An analytic p-value introduced in [41] measuring the correlation in the discrete up-down patterns of expression between a gene and a sinusoidal template |
DL Reg Score | Reg(G) | Regulation | A measure of the variability of transcript abundance about its mean expression level as defined by Eq. (2)\(^*\) |
DL Reg p-val | \(p_{reg}(G)\) | regulation | An empirical p-value measuring the probability that a random abundance profile will exhibit a DL Reg Score larger than the actual gene’s |
PerReg | Â | Combined | The product of DL Per and DL Reg Scores |
DL |  | Combined | The original periodicity measure introduced in [42] and defined according to Eq. (1)\(^*\) |
DL \(\times\) JTK |  | Combined | A modified version of the original periodicity measure introduced by [42], defined according to Eq. (1)\(^*\) with \(p_{per}(G)\) replaced by \(p_{jtk}(G)\) |