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Table 4 Time series transcript abundance datasets used in this study

From: Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes

Organism

S. cerevisiae

M. musculus (liver)

A. thaliana (whole leaf)

Synch. in

Cell cycle

Cell cycle

Circadian

Circadian

Diurnal

Circadian

Technology

RNASeq

Microarray

Microarray

RNASeq

Microarray

Microarray

Period

75 min*

94 min*

24 h

24 h

24 h

24 h

Duration

245 min

254 min

48

42

48

48

Frequency

5 min

16 min

2 h

6 h

4 h

4 h

Timepoints/cycle

15

5.875

12

4

6

6

Reference

[53]

[6]

[29]

[29]

[26] (LL_LDHC)

[26] (LDHC)

No. of genes\(^{\dagger }\)

5910

5718

19,750

18,388

22,484

22,484

No. of TFs\(^{\dagger }\)

304

307

1373

1118

1415

1415

No. of core

17

17

15

14

11

11

  1. LL_LDHC: Constant light and temperature; LDHC: 24 hour cycling light and temperature
  2. *Cell-cycle period length was taken from the respective publication, which estimated period length using the CLOCCS algorithm [54]
  3. \(^{\dagger }\) Counts are based on post-processed datasets (see Materials and Methods)