Table 3 Study parameters for the third simulation scenario resulting in 20 settings in total
From: Evaluation of tree-based statistical learning methods for constructing genetic risk scores
Parameter | Considered realizations |
|---|---|
Odds ratio of GxE interaction | 1.2, 1.5, 1.8, 2.1, 2.4 |
Amount of noise SNPs | 45 |
Interacting GxE SNP j | 2, 5 |
Correlation between \(E_1\) and \(E_2\) | 0.5, 0.9 |
Sample size | 2000 |
Prevalence | Resulting in balanced data sets |
MAF | Randomly chosen from [0.15, 0.45] |
Repetitions | 100 |